Metadata api create entity in workspace custom app (#15911)

# Introduction
Cleaner and fewer scope version of
https://github.com/twentyhq/twenty/pull/15745 ( removed sync-metadata
hack through, too ambitious migration and upgrade )

Please note that this PR won't have any interaction with the existing
sync-metadata
Which mean that the sync metadata does not update the standard entities
applicationId and universalIdentifier, and it won't we will deprecate it
on favor of a workspace migration aka twenty-standard app installation

## API Metadata
Any operation going through the api metadata nows automatically scope
the related entity to the workspace custom application instance. (
optionally passing an applicationId to allow current hacky implem of app
sync service )

We need to either ignore the tests or remove the cli status check from
the blocking status badges for a PR to be merged

## New workspace
Already handled in previous
https://github.com/twentyhq/twenty/pull/15625, when a workspace is
created it gets created a twenty standard and custom workspace instance

All his views and permissions will be prefilled to the its twenty
standard app instance with a specific universalIdentifier

## New universalIdentifier
At the contrary as before with standardIds, universalIdentifier are
unique for a given workspace
This means that createdAt field of both object company and opportunity
will have a unique universalIdentifier whereas they share the same
standardId

## FlatApplication
Introduced the flatApplication and cache. Will migrate existing
`MetadataName` to be `SyncableMetadataName` in a following PR

## What's next
Next we will describe a twenty standard app configuration as json that
will be used to generate a workspace migration that will be run instead
of the sync metadata, in a nutshell we aim to deprecated the sync
metadata
So we can standardize any entity to have a non nullable applicationId
and universalIdentifier

## Upgrade command
Introduced an upgrade command that will create a custom workspace
instance for any workspace that do not have one in order to align with
the new behavior when creating a new workspace

packages/twenty-server/src/engine/workspace-manager/dev-seeder/services/dev-seeder.service.ts

@@ -5,6 +5,8 @@ import { isDefined } from 'twenty-shared/utils';
 import { DataSource } from 'typeorm';
 
 import { ApplicationService } from 'src/engine/core-modules/application/application.service';
+import { TWENTY_STANDARD_APPLICATION } from 'src/engine/core-modules/application/constants/twenty-standard-applications';
+import { WorkspaceFlatApplicationMapCacheService } from 'src/engine/core-modules/application/services/workspace-flat-application-map-cache.service';
 import { FeatureFlagKey } from 'src/engine/core-modules/feature-flag/enums/feature-flag-key.enum';
 import { FeatureFlagService } from 'src/engine/core-modules/feature-flag/services/feature-flag.service';
 import { TwentyConfigService } from 'src/engine/core-modules/twenty-config/twenty-config.service';
@@ -21,7 +23,6 @@ import { seedPageLayoutWidgets } from 'src/engine/workspace-manager/dev-seeder/c
 import { seedPageLayouts } from 'src/engine/workspace-manager/dev-seeder/core/utils/seed-page-layouts.util';
 import { DevSeederDataService } from 'src/engine/workspace-manager/dev-seeder/data/services/dev-seeder-data.service';
 import { DevSeederMetadataService } from 'src/engine/workspace-manager/dev-seeder/metadata/services/dev-seeder-metadata.service';
-import { TWENTY_STANDARD_APPLICATION } from 'src/engine/workspace-manager/workspace-sync-metadata/constants/twenty-standard-applications';
 import { WorkspaceSyncMetadataService } from 'src/engine/workspace-manager/workspace-sync-metadata/workspace-sync-metadata.service';
 
 @Injectable()
@@ -38,6 +39,7 @@ export class DevSeederService {
     private readonly flatEntityMapsCacheService: WorkspaceManyOrAllFlatEntityMapsCacheService,
     private readonly devSeederDataService: DevSeederDataService,
     private readonly applicationService: ApplicationService,
+    private readonly workspaceFlatApplicationMapCacheService: WorkspaceFlatApplicationMapCacheService,
     @InjectDataSource()
     private readonly coreDataSource: DataSource,
   ) {}
@@ -59,6 +61,10 @@ export class DevSeederService {
         workspaceId,
       );
 
+    await this.workspaceFlatApplicationMapCacheService.invalidateCache({
+      workspaceId,
+    });
+
     const dataSourceMetadata =
       await this.dataSourceService.createDataSourceMetadata(
         workspaceId,
@@ -80,6 +86,13 @@ export class DevSeederService {
       );
     }
 
+    const { twentyStandardFlatApplication } =
+      await this.applicationService.findWorkspaceTwentyStandardAndCustomApplicationOrThrow(
+        {
+          workspaceId,
+        },
+      );
+
     await this.workspaceSyncMetadataService.synchronize({
       workspaceId: workspaceId,
       dataSourceId: dataSourceMetadata.id,
@@ -90,13 +103,17 @@ export class DevSeederService {
       dataSourceMetadata,
       workspaceId,
       featureFlags,
+      twentyStandardFlatApplication,
     });
 
     await this.devSeederMetadataService.seedRelations({
       workspaceId,
     });
 
-    await this.devSeederPermissionsService.initPermissions(workspaceId);
+    await this.devSeederPermissionsService.initPermissions({
+      workspaceId,
+      twentyStandardApplication,
+    });
 
     await seedPageLayouts(this.coreDataSource, 'core', workspaceId);
     await seedPageLayoutTabs(this.coreDataSource, 'core', workspaceId);