refactor(twenty-orm): migrate 23 grandfathered entities to WorkspaceScopedRepository (#20987)

## Summary

Follow-up to #20953. Migrates 23 of the 30 entities that were left in
`WORKSPACE_SCOPED_EXEMPTIONS` last time, so the lint rule's
workspaceId-enforcement default now covers most of the core/metadata
schema.

### Migrated (23 entities, 88 files, 22 commits)

| Family | Entities |
|---|---|
| Trivial caches | `NavigationMenuItem`, `Skill`, `DataSource`,
`Webhook`, `CommandMenuItem`, `IndexMetadata` |
| Views | `View`, `ViewField`, `ViewFieldGroup`, `ViewFilter`,
`ViewFilterGroup`, `ViewGroup`, `ViewSort` |
| Layouts | `PageLayout`, `PageLayoutTab`, `PageLayoutWidget` |
| Roles & permissions | `Role`, `RoleTarget`, `PermissionFlag`,
`ObjectPermission`, `FieldPermission`, `RowLevelPermissionPredicate`,
`RowLevelPermissionPredicateGroup` |

For each entity: swap `@InjectRepository(X)` →
`@InjectWorkspaceScopedRepository(X)` (and the field type →
`WorkspaceScopedRepository<X>`); rewrite every call site to pass
`workspaceId` as the first arg (stripped from `where`/criteria — the
wrapper throws if you include it now); register
`provideWorkspaceScopedRepository(X)` in every owning NestJS module;
update affected spec providers to
`getWorkspaceScopedRepositoryToken(X)`.

### Rule update

- `ApplicationRegistrationVariableEntity` was misclassified — moved to
`STRUCTURAL_EXEMPTIONS` (no `workspaceId` column; it's keyed on
`applicationRegistrationId` at the instance level).
- 22 of the 23 migrated entities removed from
`WORKSPACE_SCOPED_EXEMPTIONS` entirely (zero remaining raw
`@InjectRepository` sites).
- `RoleTargetEntity` also removed; one call site in
`user-workspace.service.ts` keeps a raw injection with an
`eslint-disable` + reason because `softRemove(...)` is not on the
wrapper API yet (the migration would require threading `workspaceId`
through `deleteUserWorkspace`'s three callers).

### Still exempted (7 entities, follow-up PRs)

| Entity | Why deferred |
|---|---|
| `ApplicationEntity` | ~50 sites with several cross-workspace lookups
by id (auth, OAuth, file-storage, cleanup) |
| `CalendarChannelEntity` / `MessageChannelEntity` | Use
`.increment(...)` (not on wrapper) and
`repository.manager.transaction(...)` — wrapper needs to grow
`.increment` + the transaction sites need `withManager` or dual-inject |
| `FieldMetadataEntity` / `ObjectMetadataEntity` | The metadata services
`extends TypeOrmQueryService<X>` and `super(rawRepo)` — requires
dual-inject or reworking the inheritance |
| `KeyValuePairEntity` | Allows `workspaceId: IsNull()` for
instance-level config; wrapper rejects null |
| `UpgradeMigrationEntity` | Same — instance-level + cross-workspace
ledger |

## Test plan

- [x] `npx nx typecheck twenty-server` — clean
- [x] `npx nx lint twenty-server` — clean (0/0)
- [x] All 10 affected unit specs pass (115 tests) — api-key, agent-role,
permissions, workspace-roles-permissions-cache, view-filter-group,
workflow-version-step-operations, two-factor-authentication (service +
resolver), user-workspace, file
- [ ] Server integration tests in CI

packages/twenty-server/src/engine/metadata-modules/flat-command-menu-item/flat-command-menu-item.module.ts

@@ -8,6 +8,7 @@ import { WorkspaceManyOrAllFlatEntityMapsCacheModule } from 'src/engine/metadata
 import { FrontComponentEntity } from 'src/engine/metadata-modules/front-component/entities/front-component.entity';
 import { ObjectMetadataEntity } from 'src/engine/metadata-modules/object-metadata/object-metadata.entity';
 import { PageLayoutEntity } from 'src/engine/metadata-modules/page-layout/entities/page-layout.entity';
+import { provideWorkspaceScopedRepository } from 'src/engine/twenty-orm/workspace-scoped-repository/provide-workspace-scoped-repository';
 
 @Module({
   imports: [
@@ -20,7 +21,11 @@ import { PageLayoutEntity } from 'src/engine/metadata-modules/page-layout/entiti
     ]),
     WorkspaceManyOrAllFlatEntityMapsCacheModule,
   ],
-  providers: [WorkspaceFlatCommandMenuItemMapCacheService],
+  providers: [
+    WorkspaceFlatCommandMenuItemMapCacheService,
+    provideWorkspaceScopedRepository(CommandMenuItemEntity),
+    provideWorkspaceScopedRepository(PageLayoutEntity),
+  ],
   exports: [WorkspaceFlatCommandMenuItemMapCacheService],
 })
 export class FlatCommandMenuItemModule {}

packages/twenty-server/src/engine/metadata-modules/flat-command-menu-item/services/workspace-flat-command-menu-item-map-cache.service.ts

@@ -13,6 +13,8 @@ import { createEmptyFlatEntityMaps } from 'src/engine/metadata-modules/flat-enti
 import { FrontComponentEntity } from 'src/engine/metadata-modules/front-component/entities/front-component.entity';
 import { ObjectMetadataEntity } from 'src/engine/metadata-modules/object-metadata/object-metadata.entity';
 import { PageLayoutEntity } from 'src/engine/metadata-modules/page-layout/entities/page-layout.entity';
+import { InjectWorkspaceScopedRepository } from 'src/engine/twenty-orm/workspace-scoped-repository/inject-workspace-scoped-repository.decorator';
+import { WorkspaceScopedRepository } from 'src/engine/twenty-orm/workspace-scoped-repository/workspace-scoped-repository';
 import { WorkspaceCache } from 'src/engine/workspace-cache/decorators/workspace-cache.decorator';
 import { createIdToUniversalIdentifierMap } from 'src/engine/workspace-cache/utils/create-id-to-universal-identifier-map.util';
 import { addFlatEntityToFlatEntityMapsThroughMutationOrThrow } from 'src/engine/workspace-manager/workspace-migration/utils/add-flat-entity-to-flat-entity-maps-through-mutation-or-throw.util';
@@ -21,16 +23,16 @@ import { addFlatEntityToFlatEntityMapsThroughMutationOrThrow } from 'src/engine/
 @WorkspaceCache('flatCommandMenuItemMaps')
 export class WorkspaceFlatCommandMenuItemMapCacheService extends WorkspaceCacheProvider<FlatCommandMenuItemMaps> {
   constructor(
-    @InjectRepository(CommandMenuItemEntity)
-    private readonly commandMenuItemRepository: Repository<CommandMenuItemEntity>,
+    @InjectWorkspaceScopedRepository(CommandMenuItemEntity)
+    private readonly commandMenuItemRepository: WorkspaceScopedRepository<CommandMenuItemEntity>,
     @InjectRepository(ApplicationEntity)
     private readonly applicationRepository: Repository<ApplicationEntity>,
     @InjectRepository(ObjectMetadataEntity)
     private readonly objectMetadataRepository: Repository<ObjectMetadataEntity>,
     @InjectRepository(FrontComponentEntity)
     private readonly frontComponentRepository: Repository<FrontComponentEntity>,
-    @InjectRepository(PageLayoutEntity)
-    private readonly pageLayoutRepository: Repository<PageLayoutEntity>,
+    @InjectWorkspaceScopedRepository(PageLayoutEntity)
+    private readonly pageLayoutRepository: WorkspaceScopedRepository<PageLayoutEntity>,
   ) {
     super();
   }
@@ -43,8 +45,7 @@ export class WorkspaceFlatCommandMenuItemMapCacheService extends WorkspaceCacheP
       frontComponents,
       pageLayouts,
     ] = await Promise.all([
-      this.commandMenuItemRepository.find({
-        where: { workspaceId },
+      this.commandMenuItemRepository.find(workspaceId, {
         withDeleted: true,
       }),
       this.applicationRepository.find({
@@ -62,8 +63,7 @@ export class WorkspaceFlatCommandMenuItemMapCacheService extends WorkspaceCacheP
         select: ['id', 'universalIdentifier'],
         withDeleted: true,
       }),
-      this.pageLayoutRepository.find({
-        where: { workspaceId },
+      this.pageLayoutRepository.find(workspaceId, {
         select: ['id', 'universalIdentifier'],
         withDeleted: true,
       }),