[permissions] Remove raw queries and restrict its usage (#12360)

Closes https://github.com/twentyhq/core-team-issues/issues/748

In the frame of the work on permissions we

- remove all raw queries possible to use repositories instead
- forbid usage workspaceDataSource.executeRawQueries()
- restrict usage of workspaceDataSource.query() to force developers to
pass on shouldBypassPermissionChecks to use it.

---------

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

packages/twenty-server/src/engine/core-modules/audit/jobs/audit-job.module.ts

@@ -2,16 +2,10 @@ import { Module } from '@nestjs/common';
 
 import { AuditModule } from 'src/engine/core-modules/audit/audit.module';
 import { CreateAuditLogFromInternalEvent } from 'src/engine/core-modules/audit/jobs/create-audit-log-from-internal-event';
-import { ObjectMetadataRepositoryModule } from 'src/engine/object-metadata-repository/object-metadata-repository.module';
 import { TimelineActivityModule } from 'src/modules/timeline/timeline-activity.module';
-import { WorkspaceMemberWorkspaceEntity } from 'src/modules/workspace-member/standard-objects/workspace-member.workspace-entity';
 
 @Module({
-  imports: [
-    ObjectMetadataRepositoryModule.forFeature([WorkspaceMemberWorkspaceEntity]),
-    TimelineActivityModule,
-    AuditModule,
-  ],
+  imports: [TimelineActivityModule, AuditModule],
   providers: [CreateAuditLogFromInternalEvent],
 })
 export class AuditJobModule {}