[permissions] Remove raw queries and restrict its usage (#12360)

Closes https://github.com/twentyhq/core-team-issues/issues/748

In the frame of the work on permissions we

- remove all raw queries possible to use repositories instead
- forbid usage workspaceDataSource.executeRawQueries()
- restrict usage of workspaceDataSource.query() to force developers to
pass on shouldBypassPermissionChecks to use it.

---------

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

packages/twenty-server/src/engine/api/graphql/workspace-query-runner/workspace-query-runner.module.ts

@@ -13,9 +13,7 @@ import { FileModule } from 'src/engine/core-modules/file/file.module';
 import { RecordPositionModule } from 'src/engine/core-modules/record-position/record-position.module';
 import { RecordTransformerModule } from 'src/engine/core-modules/record-transformer/record-transformer.module';
 import { TelemetryModule } from 'src/engine/core-modules/telemetry/telemetry.module';
-import { ObjectMetadataRepositoryModule } from 'src/engine/object-metadata-repository/object-metadata-repository.module';
 import { WorkspaceDataSourceModule } from 'src/engine/workspace-datasource/workspace-datasource.module';
-import { WorkspaceMemberWorkspaceEntity } from 'src/modules/workspace-member/standard-objects/workspace-member.workspace-entity';
 
 import { EntityEventsToDbListener } from './listeners/entity-events-to-db.listener';
 
@@ -25,7 +23,6 @@ import { EntityEventsToDbListener } from './listeners/entity-events-to-db.listen
     WorkspaceQueryBuilderModule,
     WorkspaceDataSourceModule,
     WorkspaceQueryHookModule,
-    ObjectMetadataRepositoryModule.forFeature([WorkspaceMemberWorkspaceEntity]),
     TypeOrmModule.forFeature([FeatureFlag], 'core'),
     AuditModule,
     TelemetryModule,